Publications / Scientific studies

2022

Diana Tilevik, Anna-Karin Pernestig, Magnus Fagerlind, Andreas Tilevik, Lars Ljungstrom, Markus Johansson, Helena Enroth.

Sequence-based genotyping of extra-intestinal pathogenic Escherichia coli isolates from patients with suspected community-onset sepsis, Sweden in a Hospital

Published by Elsevier Ltd, Microbial Pathogenesis, Vol 173, Part A, Dec 2022, 105836. https://doi.org/10.1016/j.micpath.2022.105836

2021

Marbjerg Lis, Stougaard Caroline Louise, Sørensen Sophie-Amalie Grønhøj, Thomsen Amalie Vørs, Wang Lis, Andersen Lise, Andersen Thomas Emil, Kallipolitis Birgitte, Kemp Michael.

A New Tool for Analyses of Whole Genome Sequences Reveals Dissemination of Specific Strains of Vancomycin-Resistant Enterococcus faecium in a Hospital

Frontiers in Medicine, Vol 8, Oct 2021, 2033. https://doi.org/10.3389/fmed.2021.733676

Slott Jensen, M., Chen, M., Detlefsen, M., Kudsk Klitgaard, J., Andersen, T., & Kemp, M. (2021).

Whole-genome sequence analyses by a new easy-to-use software solution support the suspicion of a neonatal ward outbreak of methicillin-resistant Staphylococcus aureus (MRSA) and transmission between hospitals.

Infection Control & Hospital Epidemiology, 1-3. https://doi.org/10.1017/ice.2021.123

Saxenborn P, Baxter J, Tilevik A, Fagerlind M, Dyrkell F, Pernestig AK, Enroth H, Tilevik D.

Genotypic Characterization of Clinical Klebsiella spp. Isolates Collected From Patients With Suspected Community-Onset Sepsis, Sweden.

Front Microbiol. 2021 Apr 30;12:640408. https://doi.org/10.3389/fmicb.2021.640408

Dyrkell F, Giske CG, Fang H.

Epidemiological typing of ST80 vancomycin-resistant Enterococcus faecium: core genome multilocus sequence typing versus single nucleotide polymorphism-based typing.

J Glob Antimicrob Resist. 2021 Mar 21;25:119-123. https://doi.org/10.1016/j.jgar.2021.03.005

2020

Werner A, Mölling P, Fagerström A, Dyrkell F, Arnellos D, Johansson K, Sundqvist M, Norén T.

Whole genome sequencing of Clostridioides difficile PCR ribotype 046 suggests transmission between pigs and humans

PLoS One. 2020 Dec 21;15(12):e0244227. https://doi.org/10.1371/journal.pone.0244227

Cunningham, S., Jeraldo, P., Schuetz, A., Heitman, H., Patel, R. (2020).

Staphylococcus aureus whole genome sequence-based susceptibility and resistance prediction using a clinical amenable workflow.

Diagn. Microbiol. Infect. Dis 2020-05. https://pubmed.ncbi.nlm.nih.gov/32417617

2019

Giske, C. G., Dyrkell, F., Arnellos, D., Vestberg, N., Hermansson Panna, S., Fröding, I., … Fang, H. (2019).

Transmission events and antimicrobial susceptibilities of methicillin-resistant Staphylococcus argenteus in Stockholm.

Clinical Microbiology and Infection, (Vol. 25, Issue 10, P1289.E5-1289.E8, Oct. 1, 2019). https://doi.org/10.1016/j.cmi.2019.06.003

2018

Enström, J., Fröding, I., Giske, C. G., Ininbergs, K., Bai, X., Sandh, G., … Fang, H. (2018).

USA300 methicillin-resistant Staphylococcus aureus in Stockholm, Sweden, from 2008 to 2016.

PLoS ONE, 13(11), 1–11. https://doi.org/10.1371/journal.pone.0205761

Hallbäck, E. T., Karami, N., Adlerberth, I., Cardew, S., Ohlén, M., Jakobsson, H. E., & Stadler, L. S. (2018).

Methicillin-resistant Staphylococcus argenteus misidentified as methicillin-resistant Staphylococcus aureus emerging in western Sweden.

Journal of Medical Microbiology, 67(7), 968–971. https://doi.org/10.1099/jmm.0.000760

2017

Marathe, N. P., Pal, C., Gaikwad, S. S., Jonsson, V., Kristiansson, E., & Larsson, D. G. J. (2017).

Untreated urban waste contaminates Indian river sediments with resistance genes to last resort antibiotics.

Water Research, 124(July), 388–397. https://doi.org/10.1016/j.watres.2017.07.060

2014

Bengtsson-Palme, J., Boulund, F., Fick, J., Kristiansson, E., & Joakim Larsson, D. G. (2014).

Shotgun metagenomics reveals a wide array of antibiotic resistance genes and mobile elements in a polluted lake in India.

Frontiers in Microbiology, 5(Dec), 1–14. https://doi.org/10.3389/fmicb.2014.00648