Publications
Olivier Mortelé, Stefanie van Kleef–van Koeveringe, Sarah Vandamme, Hilde Jansens, Herman Goossens, Veerle Matheeussen, Epidemiology and genetic diversity of linezolid-resistant Enterococcus clinical isolates in Belgium from 2013 to 2021, Journal of Global Antimicrobial Resistance, Volume 38, 2024, Pages 21-26, https://doi.org/10.1016/j.jgar.2024.04.010
Brunet, S., Grankvist, A., Jaen-Luchoro, D. et al. Nationwide multicentre study of Nanopore long-read sequencing for 16S rRNA-species identification. Eur J Clin Microbiol Infect Dis. 2025 May 10. https://doi.org/10.1007/s10096-025-05158-w
Cerón S, Salem-Bango Z, Contreras DA, Ranson EL, Yang S. Clinical and Genomic Characterization of Carbapenem-Resistant Klebsiella pneumoniae with Concurrent Production of NDM and OXA-48-like Carbapenemases in Southern California, 2016–2022
Microorganisms. 2023 Jun 30;11(7):1717. https://doi.org/10.3390/microorganisms11071717
Shemirani, M.I., Tilevik, D., Tilevik, A. et al. Benchmarking of two bioinformatic workflows for the analysis of whole-genome sequenced Staphylococcus aureus collected from patients with suspected sepsis. BMC Infect Dis 23, 39 (2023). https://doi.org/10.1186/s12879-022-07977-0
Tång Hallbäck E., Björkman J.T, Dyrkell F., Welander J., Fang H., Sylvin I., Kaden R., Eilers H., Söderlund Strand A., Mernelius S., Berglind L., Campillay Lagos A., Engstrand L., Sikora P., and Mölling P. Evaluation of nationwide analysis surveillance for methicillin-resistant Staphylococcus aureus within Genomic Medicine Sweden
Microb Genom. 2025 Jan 27;11(1):001331. https://doi.org/10.1099/mgen.0.001331
Deshpande LM, Vega S, Tinoco JC, Castanheira M. Endemicity of Pseudomonas aeruginosa producing IMP-18 and/or VIM-2 MBLs from the high-risk clone ST111 in Central America. JAC Antimicrob Resist. 2023 Aug 1;5(4):dlad092. doi: 10.1093/jacamr/dlad092.
Shemirani MI, Tilevik D, Tilevik A, Jurcevic S, Arnellos D, Enroth H, Pernestig AK. Benchmarking of two bioinformatic workflows for the analysis of whole-genome sequenced Staphylococcus aureus collected from patients with suspected sepsis. BMC Infect Dis. 2023 Jan 20;23(1):39. doi: 10.1186/s12879-022-07977-0
Werner A, Mölling P, Fagerström A, Dyrkell F, Arnellos D, et al. Whole genome sequencing of Clostridioides difficile PCR ribotype 046 suggests transmission between pigs and humans
PLoS One. 2020 Dec 21;15(12):e0244227. https://doi.org/10.1371/journal.pone.0244227
Giske CG, Dyrkell F, Arnellos D, Vestberg N, Hermansson Panna S, Fröding I, Ullberg M, Fang H. Transmission events and antimicrobial susceptibilities of methicillin-resistant Staphylococcus argenteus in Stockholm. Clin Microbiol Infect. 2019 Oct;25(10):1289.e5-1289.e8. doi: 10.1016/j.cmi.2019.06.003.
Scott A Cunningham, Patricio R Jeraldo, Audrey N Schuetz, Angela A Heitman, Robin Patel. Staphylococcus aureus whole genome sequence-based susceptibility and resistance prediction using a clinically amenable workflow
Diagn Microbiol Infect Dis. 2020 Jul;97(3):115060. https://doi.org/10.1016/j.diagmicrobio.2020.115060
Trobos M, Firdaus R, Svensson Malchau K, Tillander J, Arnellos D, Rolfson O, Thomsen P, Lasa I. Genomics of Staphylococcus aureus and Staphylococcus epidermidis from Periprosthetic Joint Infections and Correlation to Clinical Outcome. Microbiol Spectr. 2022 Aug 31;10(4):e0218121. doi: 10.1128/spectrum.02181-21.
Deshpande LM, Davis AP, Dyrkell F, Arnellos D, Castanheira M. 831. Analysis of a Worldwide Collection of Klebsiella pneumoniae CC258 with Reference to Carbapenemase Production Using the 1928 Core Genome (cg) Multilocus Sequence Type (MLST) Reveals Endemicity and Global Dissemination of Clones. Open Forum Infect Dis. 2020 Dec 31;7(Suppl 1):S456–7. doi: 10.1093/ofid/ofaa439.1020.
Fredrik Dyrkell, Christian G. Giske, Hong Fang. Epidemiological typing of ST80 vancomycin-resistant Enterococcus faecium: core genome multilocus sequence typing versus single nucleotide polymorphism-based typing
J Glob Antimicrob Resist. 2021 Jun:25:119-123. https://doi.org/10.1016/j.jgar.2021.03.005
Saxenborn P, Baxter J, Tilevik A, Fagerlind M, Dyrkell F, Pernestig AK, Enroth H, Tilevik D. Genotypic Characterization of Clinical Klebsiella spp. Isolates Collected From Patients With Suspected Community-Onset Sepsis, Sweden. Front Microbiol. 2021 Apr 30;12:640408. doi: 10.3389/fmicb.2021.640408.
Lagos, A.C., Sundqvist, M., Dyrkell, F. et al. Evaluation of within-host evolution of methicillin-resistant Staphylococcus aureus (MRSA) by comparing cgMLST and SNP analysis approaches
Sci Rep. 2022 Jun 22;12(1):10541. https://doi.org/10.1038/s41598-022-14640-w
Diana Tilevik, Anna-Karin Pernestig, Magnus Fagerlind, Andreas Tilevik, Lars Ljungström, Markus Johansson, Helena Enroth, Sequence-based genotyping of extra-intestinal pathogenic Escherichia coli isolates from patients with suspected community-onset sepsis, Sweden, Microbial Pathogenesis, Volume 173, Part A, 2022, https://doi.org/10.1016/j.micpath.2022.105836.