Outbreak Analysis Using 1928 - Enterococcus faecium

cgMLST UPGMA-clustering of a Enterococcus faecium outbreak using the 1928 platform

The tree is created using UPGMA and distances shown are computed based on pairwise allelic differences (hamming distance). Missing genes are not included in the count.

Whole-genome sequencing reveals transmission of vancomycin-resistant Enterococcus faecium in a healthcare network

Hayley J. Brodrick, Kathy E. Raven, Ewan M. Harrison, Beth Blane, Sandra Reuter, M. Estée Török, Julian Parkhill, Sharon J. Peacock

pmid: 26759031

The 1928D Enterococcus faecium cgMLST schema is created from 53 reference genomes giving the scheme 1300 core genes. All genes included in the schema are present in at least 95% of reference genomes.