The tree is created using UPGMA and distances shown are computed based on pairwise allelic differences (hamming distance). Missing genes are not included in the count.
Hayley J. Brodrick, Kathy E. Raven, Ewan M. Harrison, Beth Blane, Sandra Reuter, M. Estée Török, Julian Parkhill, Sharon J. Peacock
The 1928D Enterococcus faecium cgMLST schema is created from 53 reference genomes giving the scheme 1300 core genes. All genes included in the schema are present in at least 95% of reference genomes.